1. Compression of annotated nucleotide sequences.

    Related Articles Compression of annotated nucleotide sequences. IEEE/ACM Trans Comput Biol Bioinform. 2007 Jul-Sep;4(3):447-57 Authors: Korodi G, Tabus I This article introduces an algorithm for the lossless compression of DNA files, which contain annotation text besides the nucleotide sequence. First a grammar is specifically designed to capture the regularities of the annotation text. A revertible transformation uses the grammar rules in order to equivalently represent the original file as a collection of parsed segments and a sequence of decisions made by the grammar parser. This decomposition enables the efficient use of state-of-the-art encoders for processing the ...
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